Living cumulative map · Weeks 1–4

🧠 How It All Connects

Follow one biological story from the basic cell and neuron → the instructions that help build and regulate the system → the electrical signal inside the neuron → the chemical handoff to the next neuron.

Course termsRemember thisExampleConnection

🔁 The Core Loop — the piece that ties Weeks 1, 3, and 4 together

Week 1 gives you the parts and the direction. Dendrites receive → soma/cell body → axon sends → presynaptic terminals hand the message off.

1 · RECEIVE / ADD INPUTS
The neuron receives graded input. Excitatory input moves it toward threshold; inhibitory input moves it away.
2 · REACH THRESHOLD
If the summed depolarization reaches threshold, the neuron triggers an action potential.
3 · FIRE — WEEK 3
The action potential is the electrical event that propagates down the axon.
4 · RESET / REFRACTORY PERIOD — WEEK 3
After firing, the membrane repolarizes, may briefly hyperpolarize, and goes through the refractory period as it returns toward readiness. This prevents “fire again” from meaning an instant no-reset repeat.
5 · HAND OFF — WEEK 4
When the action potential reaches the presynaptic terminal, Ca²⁺ enters → vesicles release neurotransmitter → neurotransmitter crosses the synaptic cleft → binds receptors on the postsynaptic cell.
6 · RECEIVER EFFECT — WEEK 4
Those receptor effects create EPSPs or IPSPs in the postsynaptic neuron. They can add together and move that next neuron toward or away from threshold.
7 · LOOP INTO THE NEXT NEURON
If the next neuron reaches threshold, that neuron generates its own action potential. Now the Week 3 electrical sequence happens inside the new neuron, followed by another Week 4 synaptic handoff.

Memory line: Receive → Sum → Threshold → Fire → Reset → Hand off → Next neuron receives.

The most important distinction: Week 3 is what happens inside one neuron as the electrical signal fires and travels. Week 4 is what happens between neurons when the message is handed across the synapse. Then the receiving neuron can begin its own Week 3 cycle if its inputs reach threshold.

Week 1 · Build the map
Cells → neuron parts → sensory input → CNS processing → motor output
Week 2 · Where the biological instructions come from
Genes/DNA → mRNA → proteins → biological structure and function; genes and environment interact
Week 3 · Put electricity on the axon
Resting potential → threshold → action potential → refractory/reset → propagation
Week 4 · Hand the message to the next cell
Presynaptic terminal → Ca²⁺ → neurotransmitter → receptor → EPSP/IPSP → summation → possible threshold in the next neuron
Week 1Week 2Week 3Week 4
1
Start with a cell

A neuron is a cell, so Week 1 starts with the basic parts that keep a cell working.

Plasma cell membrane = boundary / controls movement in and out
Nucleus = contains chromosomes
Ribosomes = protein synthesis
Endoplasmic reticulum = transports newly synthesized proteins
Mitochondria = energy

Memory: Membrane = border · Nucleus = chromosomes · Ribosomes = proteins · ER = transport · Mitochondria = energy.

Week 1 professor slides · Structure of a cell
2
Specialize that cell into a neuron

Now give the cell a shape designed for communication.

Dendrites receive
Soma = home base/cell body
Axon carries the message away
Myelin insulates the axon
Presynaptic terminals = sending end

Dendrites receive → Soma home base → Axon sends → Terminals hand off.

Forward connection: Week 3 puts the action potential on the axon. Week 4 begins at the presynaptic terminal.

Week 1 professor slides · Structure of a Neuron
3
Move information through the nervous system

Week 1 also gives the direction of a basic sensory-to-motor pathway.

Stimulus / receptor in the PNS
Afferent / sensory neuron carries information toward the CNS
Interneurons process/relay in the CNS
Efferent / motor neuron carries output away from the CNS
Muscle = effector

Afferent admits. Efferent exits.

Hot stove: heat → receptor → sensory/afferent input → CNS processing → motor/efferent output → muscle pulls the hand away.

Week 1 lecture physiological pathway + course neuron-type material
4
Week 2: zoom underneath the structure to genes and proteins

Week 2 adds another layer: the nervous system is biological tissue built and regulated through genetic instructions interacting with environment.

Gene = segment of DNA / unit of heredity
DNA information is transcribed to mRNA
mRNA guides protein synthesis
Proteins contribute to biological structure and function

DNA → mRNA → protein.

Connection to Brain City: Week 1 shows you the structures. Week 2 explains a course-level source of the biological instructions used to build and regulate those structures. It also emphasizes genes AND environment, not genes versus environment.

Week 2 textbook Module 4.1 · Professor slides “Genes / Gene Expression” · Week 2 lecture
5
Week 3: the neuron sits ready at resting potential

Now zoom inside the neuron membrane. The resting neuron is electrically prepared to respond.

Resting potential ≈ −70 mV
Na⁺ and K⁺ concentration/electrical gradients create forces
Na⁺/K⁺ pump helps maintain gradients: 3 Na⁺ out / 2 K⁺ in

Resting does not mean inactive — it means ready.

Look back: this electrical state exists across the membrane of the neuron you learned in Week 1.

Week 3 textbook Module 1.2 · Professor slides · Lecture transcript · Full Story notes
6
A stimulus pushes the membrane toward threshold

Inputs produce graded changes in membrane voltage. If depolarization reaches threshold, voltage-gated Na⁺ channels open.

Threshold is not the action potential. Threshold is what must be reached to trigger the action potential.

This is where your Week 3 graph starts turning from “ready” into “fire.”

Week 3 course sources · action-potential sequence
7
The action potential fires, resets, and travels down the axon
Voltage-gated Na⁺ channels open → Na⁺ enters → depolarization
Na⁺ channels close/inactivate
K⁺ channels open → K⁺ leaves → repolarization
Undershoot / hyperpolarization + refractory period → return toward resting/readiness
The action potential propagates along the axon; myelin speeds conduction

Week 3 = electrical signal traveling inside the neuron.

Critical handoff: when that traveling action potential reaches the presynaptic terminal, Week 4 begins.

Week 3 textbook Module 1.2 · Professor slides · Lecture transcript · Full Story notes
8
Week 4 starts: the action potential arrives at the presynaptic terminal

The presynaptic neuron is the sender. The postsynaptic neuron is the receiver. Between them is the synaptic cleft.

Pre sends. Post receives.

Week 3 → Week 4: electrical down the axon; chemical across the gap.

Week 4 textbook Ch.2 · Professor slides “The Concept of the Synapse” · Lecture
9
Calcium turns the electrical arrival into chemical release
Action potential arrives
Ca²⁺ enters the presynaptic terminal
Synaptic vesicles fuse with the presynaptic membrane
Neurotransmitter is released into the synaptic cleft
Neurotransmitter crosses the cleft and binds receptors

AP arrives → Ca²⁺ enters → vesicles release → transmitter crosses → receptors bind.

Week 4 textbook Ch.2 pp.50–51 · Slides “Sequence of Events at the Synapse” · Lecture
10
The postsynaptic neuron becomes more or less likely to fire

The receiver does not automatically fire just because neurotransmitter arrived. The effect can move it toward or away from threshold.

EPSP = excitatory postsynaptic potential → graded depolarization → closer to threshold → more likely to fire
IPSP = inhibitory postsynaptic potential → hyperpolarization → farther from threshold → less likely to fire

Excitatory = toward threshold. Inhibitory = away from threshold.

Back to Week 3: threshold still matters. Week 4 explains how synaptic inputs can push the postsynaptic membrane toward or away from that Week 3 threshold.

Week 4 textbook Ch.2 pp.43–46 · Professor slides “Synapses” · Lecture
11
Multiple inputs can add together — then the next neuron may start its own cycle

Postsynaptic graded potentials can combine.

Temporal summation = repeated inputs add over time
Spatial summation = inputs from different locations add together

If the summed depolarization reaches threshold, the postsynaptic neuron can generate its own action potential. That means Week 3 now happens inside this next neuron.

The repeating loop: receive/sum → threshold → action potential → refractory/reset → axon → presynaptic terminal → synapse → next neuron receives/sums.

Week 4 textbook Ch.2 pp.43–44 · Professor slides · Lecture

🎯 The full story you should eventually be able to say

A neuron is a specialized cell with dendrites, a soma, an axon, myelin, and presynaptic terminals. Sensory information can enter through the PNS, travel toward the CNS, be processed, and leave through motor pathways to an effector. Genes and environment help shape the biological system, with DNA information flowing through mRNA to proteins. Inside a neuron, membrane gradients create a resting potential. Enough depolarization reaches threshold and triggers an action potential, which travels down the axon. The neuron also goes through repolarization, an undershoot/hyperpolarization, and a refractory/reset period as it returns toward readiness. When the action potential reaches the presynaptic terminal, calcium enters, vesicles release neurotransmitter, and the chemical crosses the synaptic cleft to receptors on the postsynaptic cell. That input can create an EPSP that moves the receiver toward threshold or an IPSP that moves it away. If summed excitation reaches threshold, the postsynaptic neuron generates its own action potential. In other words: Week 3 explains the electrical cycle inside a neuron, Week 4 explains the chemical handoff between neurons, and the receiving neuron can then begin its own Week 3 cycle.

This page is meant to grow. When a new week adds another piece to this biological story, we extend this same path rather than starting over.